April 15, 2024


MSU discovers new insights hiding above a 60-year-old fire
Marco Mechan-Llontop and Samuel Barnett work at a microbial sampling site near the Centralia mine fire in October 2021, when they were both postdoctoral scholars in the Shade lab at Michigan State University. Credit: Keara Grady

Microbes are vital to maintaining healthy, fertile soil, which, in turn, is vital to the overall health of ecosystems. But what happens to these microbes when humans cause long-term damage to the environment?

Michigan State University researchers have provided new answers to that question by analyzing soil microbes near a mine that’s been burning for more than 60 years.

“If you look in a gram of soil, you have tens of thousands of different bacterial species in that soil,” explained Ashley Shade, the principal investigator of the report documenting the new insights published in the journal Ecology Letters. Shade is an adjunct associate professor in MSU’s Department of Microbiology, Genetics, and Immunology.

“Soil is the most diverse microbiome that we know,” Shade continued. “It’s more diverse even than the human gut.”

For seven years, Shade and Samuel Barnett, a postdoctoral scholar in her lab, have been studying soil microbial communities in Centralia, Pennsylvania. The town is the site of an underground coal mine fire that has been burning since 1962.

The Centralia mine fire is an example of a “press disturbance”—a long-term, continuous, human-caused disturbance.

In this study, the researchers used this system as a model to try to understand how bacterial communities respond and potentially recover in the face of an intense environmental change. This is particularly important in the face of another press disturbance: .

In fact, the team hopes that its findings will spur additional research into the development of strategies for microbiome restoration for ecosystems impacted by climate change and other press disturbances.

MSU discovers new insights hiding above a 60-year-old fire
MSU researchers also recorded soil temperature at sampling sites in their study of microbial communities near the Centralia mine fire. The temperature at this site reads 43.3 degrees Celsius, or nearly 110 degrees Fahrenheit. Credit: Samuel Barnett

A tale of fire and microbes

The Centralia fire started accidentally when efforts to clean a landfill ignited the adjacent mine, and it has been burning continuously since then. As the fire burns, it moves through the abandoned underground mine shaft, heating the soil above it as it travels. This heat changes the structure of the microbial communities.

The researchers selected sampling sites at different points along the fire’s path and examined the soil before, during, and after being heated. The team also sampled from nearby sites that were completely unaffected by the fire.

The sampling was conducted yearly between 2015 and 2021.

“We go out every October, and we take soil cores,” Barnett explained. “We have a big PVC pipe that we sterilize and drive into the soil and pull out about 20 centimeters or 8 inches of soil. Then we sieve the soil to get rid of roots and rocks and the stuff we don’t want and then freeze it in liquid nitrogen and bring it to the lab.”

The next step was for the researchers to extract bacterial DNA and RNA. They sequenced the DNA to determine which types of bacteria were present. They then looked at the ratio of RNA to DNA to determine which bacteria are biologically active and which are dormant.

MSU discovers new insights hiding above a 60-year-old fire
Michigan State researchers showed that, although microbes return to the site of an unnatural disaster, the balance of species that are active and dormant in maintaining the ecosystem changes. Credit: Ecology Letters (2024). DOI: 10.1111/ele.14393

“Dormant is a word for a reversible state of activity that many life forms assume at some point. It’s a really important strategy to help organisms withstand stress in their environment,” Shade said.

“Many people don’t realize that an incredible number of are simply not active and functioning at any given time. This is an important point because the active microbes are the ones that contribute to ecosystem functions,” she continued. “I think this is special about this study because most research does not consider this question of who’s active and who’s not.”

The researchers infused this perspective into the recovery of microbial communities.

Although the microbial populations recovered after the fire had passed—with new bacteria being blown in by wind, for example—the species that were active or dormant had changed compared with conditions before the fire.

“If we can understand what wakes up the dormant microbes, we can try to manage the microbiome, for example, to wake up when we need it to wake up, to go to sleep potentially when we need it to go to sleep,” Shade concluded.

More information:
Samuel E. Barnett et al, Arrive and wait: Inactive bacterial taxa contribute to perceived soil microbiome resilience after a multidecadal press disturbance, Ecology Letters (2024). DOI: 10.1111/ele.14393

Citation:
Researchers discover new insights hiding above a 60-year-old fire (2024, March 11)
retrieved 11 March 2024
from https://phys.org/news/2024-03-insights-year.html

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